///|
fn main {
println("=== tximeta Demo ===")
let data = @src.tximeta_sample_data()
println("\n1. Imported data summary")
println(" " + @src.tximeta_data_summary(data))
println("\n2. Linked transcriptome provenance")
match data.txome {
Some(t) => {
println(" organism: " + t.organism)
println(" genome: " + t.genome)
println(" release: " + t.release)
println(" source: " + t.source)
println(" sha: " + t.sha)
}
None => println(" unlinked")
}
println("\n3. Coldata per sample")
for sample in data.coldata.keys() {
match data.coldata.get(sample) {
Some(cols) => {
let mut line = sample + ": "
for k in cols.keys() {
match cols.get(k) {
Some(v) => line = line + k + "=" + v + " "
None => ()
}
}
println(" " + line)
}
None => ()
}
}
println("\n4. Merged metadata")
let meta = @src.tximeta_metadata(data)
for k in meta.keys() {
match meta.get(k) {
Some(v) => println(" " + k + " = " + v)
None => ()
}
}
println("\n5. Summarize to gene level")
let tx2gene = @src.tximeta_sample_tx2gene()
let (genes, counts, _abundance) = @src.tximeta_summarize_to_gene(
data,
tx2gene~,
)
println(" " + genes.length().to_string() + " genes")
for i in 0..